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For spack version v0.22.3, some R packages are incompatible with the default version of R. It is the case of for example ggplot2
==> Installing r-ggplot2-3.4.2-4al6l3kudjoi5n4jhccl5l6smtfwssob [59/59]
==> No binary for r-ggplot2-3.4.2-4al6l3kudjoi5n4jhccl5l6smtfwssob found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/70/70230aa70a2c6f844fc41dd93e5f62af6859dfed390026ae58f223637e5283ca.tar.gz
==> No patches needed for r-ggplot2
==> r-ggplot2: Executing phase: 'install'
==> Error: ProcessError: Command exited with status 1:
'/tmp/53552967/spack_ci/spack/opt/spack/linux-rhel9-zen2/gcc-12.3.0/r-4.4.0-2nv2pnf6wweh2fxxfsrrsluecbywzhsr/bin/R''--vanilla''CMD''INSTALL''--library=/tmp/53552967/spack_ci/spack/opt/spack/linux-rhel9-zen2/gcc-12.3.0/r-ggplot2-3.4.2-4al6l3kudjoi5n4jhccl5l6smtfwssob/rlib/R/library''/tmp/53552967/cruiz1/spack-stage/spack-stage-r-ggplot2-3.4.2-4al6l3kudjoi5n4jhccl5l6smtfwssob/spack-src'
2 errors found in build log:
5 ** using staged installation
6 ** R
7 ** data
8 *** moving datasets to lazyload DB
9 ** inst
10 ** byte-compile and prepare package for lazy loading
>> 11 Error in .make_numeric_version(x, strict, .standard_regexps()$valid_numeric_version) :
12 invalid non-character version specification 'x' (type: double)
>> 13 Error: unable to load R code in package 'ggplot2'
14 Execution halted
15 ERROR: lazy loading failed for package 'ggplot2'
16 * removing '/tmp/53552967/spack_ci/spack/opt/spack/linux-rhel9-zen2/gcc-12.3.0/r-ggplot2-3.4.2-4al6l3kudjoi5n4jhccl5l6smtfwssob/rlib/R/library/ggplot2'
The impact of this is limited, given that R packages are provided by r-light container but we can need them as a dependency for other packages. It is the case of trinity package.
For spack version
v0.22.3, some R packages are incompatible with the default version of R. It is the case of for exampleggplot2The impact of this is limited, given that R packages are provided by r-light container but we can need them as a dependency for other packages. It is the case of
trinitypackage.The explanation of the incompatibility is here:
https://github.com/tidyverse/ggplot2/issues/6152
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