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package tbl2asn broken #3

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Cristian-Ruiz opened this issue May 12, 2025 · 2 comments
Open

package tbl2asn broken #3

Cristian-Ruiz opened this issue May 12, 2025 · 2 comments

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@Cristian-Ruiz
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Cristian-Ruiz commented May 12, 2025

if we do ldd on the main binary:

linux-vdso.so.1 (0x00007fff590e7000)
        libidn.so.11 => not found
        libz.so.1 => /lib64/libz.so.1 (0x00007f429d268000)
        libm.so.6 => /lib64/libm.so.6 (0x00007f429d18d000)
        libc.so.6 => /lib64/libc.so.6 (0x00007f429cf84000)
        /lib64/ld-linux-x86-64.so.2 (0x00007f429d28d000)

We can download another version from here:

https://ftp.ncbi.nlm.nih.gov/asn1-converters/by_program/table2asn/

We should update the spack package internally

@Cristian-Ruiz
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The problem seems to come from the module. The LD_LIBRARY_PATH is not defined with the path of the library libidn. Needs investigation

@Cristian-Ruiz
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The binary is downloaded and not compiled, so rpath is not set. We should do it with patchelf tool

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